rs51490112 SNP Detail

Summary

• ID
  rs51490112
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55552234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAATTAC CTAGTTAAGG
  TAAGCAGTAA GAGGGAACTG ATATTTAGAA ACATTGTTAA GGGGAGAGCA AACCAAAGGT
  GCTGGACTGC TGGAAAGCTG TTGAAAACCC GCCGACCTGT GCCTGGTCAC AGAGAACACA
  GCCGACCTGT GCCTGGTCAC TCAGAACACA GCCAGCCTGG TGTCTGGACA CCAAGAGCAG
  W
  GCCGACTGTC CCCCAGTCAC ACACTAGCTA CTATTTCATT GTCAGAGTCT GGTGGACAGA
  GGAACAACAA GCATAGGCTC AGAAATAGTC TTAATCCCAA ACCTTGTATC CTTGCAAGGT
  ACGTAAATGC TATCTTGTTG GGGGTGAGAA AAAGTCAATA CCAGTCCGTT AGATCAAAAT
  AAAACCTGGA TCAAGTGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135189239	ENSMUSSNP2393805	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51490112					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55552234 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576982	regulatory region 576982			272 bp distal