rs51490036 SNP Detail

Summary

• ID
  rs51490036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126453702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAACTCAA GTCTATGGGC TTGTGTGGTA
  GGCCTCTAGA GCTCACATGG GAGACCTTTG CTGTCTTTGA TCTTCTAGGC TTTTAACATG
  GAAATCATTT ACCAATCCTG TAAGTAGATG CTAATCATAT TCTCACTGAG CCCGAGAAGT
  Y
  AGTCTTCCCC TAGCCACCTC TCTCCTAAGT GCTAGAGGTG ACCCAGGAAC ACAAGCAACT
  TAGCACTGAC ATCAGAGCTT GGAGCTGCTG GGTCAGTTCC ACAGTTTACA CTGTGTGTAA
  AATCTAGCTG CCTCAGCCCT CCAATCTCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135838233	ENSMUSSNP6402246	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320947054	CHEV_3_126362971	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51490036					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126453702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43006	predicted gene 43006			730 bp downstream
Rr397996	regulatory region 397996			1861 bp upstream
Rr584669	regulatory region 584669			1811 bp distal
Rr584670	regulatory region 584670			906 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1809 bp proximal