rs51483128 SNP Detail

Summary

• ID
  rs51483128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123029521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGCCACA TTCTCGATAA GTTTACCAAC AGCGCAGAAG
  ACAAGCAAAT GACCTGAAAG ACCATCAACA GGTTGTTTTC ATCCCCCTCC CCACCTTCCC
  Y
  GCATCCAACA GCCTCTCTCG GTCCTCCTAC CTTTGCAACT TGCAAAGGCT GCTGCTCCTC
  CTTGCCTCCT TGCAGTCTGA ACCCCCAGGG CGCCCCTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135760893	ENSMUSSNP913198	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320918239	CHEV_3_122938790	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51483128					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123029521 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13775	CpG island 13775			120 bp proximal
Rr584473	regulatory region 584473			1001 bp distal
Rr584474	regulatory region 584474			1173 bp distal
Rr584475	regulatory region 584475			214 bp proximal
Rr584476	regulatory region 584476			1048 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant
Tssr35497	transcription start site region 35497			239 bp downstream
Tssr35498	transcription start site region 35498			262 bp downstream