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rs51481222 SNP Detail
Summary
  • ID
    rs51481222
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:19363531 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGTCTAGGG GTGGGCAAAG
    AAAACTGAAG CTTAAATTGT TTTTTGTGTG GTAATTAAGA TACTAGGTAA AGCTCTTGGG
    GTCAGTTTTG TTTTCAATCC CTTGATCTTC CCTCTCAGGA AGCAGGGACA TGTAACACAT
    ATTTCATAAC TTTAGATAAA GTGTGCCTTA CTATTTATAT GTAAGTGAAA GTGGGTGTTC
    R
    TCATGTCTGC TGATCTCAGG AAGAAAACAG TATTTAGAAA TGAAAGTTAC TTCCATTAAA
    GACCTTTAAT TACTATTATT GAAAACCTTC TCCTGAGTGC TTTAATATAT TTTGATATTA
    TTCTGGAACT TTAAAACGTG TTAAGCAATA ATAAAAAATA CAGTTCACAA ACTACACTTC
    AAAGTAACAA AAGTATTATT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
ss134666615 ENSMUSSNP1677738 ENSEMBL ENSEMBL_Sanger f SNP G G G A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
rs51481222 SNP G G G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:19363531 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
3110037C07Rik RIKEN cDNA 3110037C07 gene 1515 bp upstream
Cpgi13002 CpG island 13002 1077 bp proximal
Pde7a phosphodiesterase 7A Intron
Noncoding-Transcript-Variant
Rr573969 regulatory region 573969 524 bp proximal
Rr573970 regulatory region 573970 1945 bp proximal
Tssr28510 transcription start site region 28510 1325 bp upstream
Tssr28511 transcription start site region 28511 1481 bp upstream
Tssr32696 transcription start site region 32696 1876 bp downstream
Tssr32697 transcription start site region 32697 1902 bp downstream
Tssr32698 transcription start site region 32698 1966 bp downstream
Tssr32699 transcription start site region 32699 1982 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory