rs51481222 SNP Detail

Summary

• ID
  rs51481222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19363531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCTAGGG GTGGGCAAAG
  AAAACTGAAG CTTAAATTGT TTTTTGTGTG GTAATTAAGA TACTAGGTAA AGCTCTTGGG
  GTCAGTTTTG TTTTCAATCC CTTGATCTTC CCTCTCAGGA AGCAGGGACA TGTAACACAT
  ATTTCATAAC TTTAGATAAA GTGTGCCTTA CTATTTATAT GTAAGTGAAA GTGGGTGTTC
  R
  TCATGTCTGC TGATCTCAGG AAGAAAACAG TATTTAGAAA TGAAAGTTAC TTCCATTAAA
  GACCTTTAAT TACTATTATT GAAAACCTTC TCCTGAGTGC TTTAATATAT TTTGATATTA
  TTCTGGAACT TTAAAACGTG TTAAGCAATA ATAAAAAATA CAGTTCACAA ACTACACTTC
  AAAGTAACAA AAGTATTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134666615	ENSMUSSNP1677738	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51481222					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19363531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
3110037C07Rik	RIKEN cDNA 3110037C07 gene			1515 bp upstream
Cpgi13002	CpG island 13002			1077 bp proximal
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573969	regulatory region 573969			524 bp proximal
Rr573970	regulatory region 573970			1945 bp proximal
Tssr28510	transcription start site region 28510			1325 bp upstream
Tssr28511	transcription start site region 28511			1481 bp upstream
Tssr32696	transcription start site region 32696			1876 bp downstream
Tssr32697	transcription start site region 32697			1902 bp downstream
Tssr32698	transcription start site region 32698			1966 bp downstream
Tssr32699	transcription start site region 32699			1982 bp downstream