rs51473895 SNP Detail

Summary

• ID
  rs51473895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119670252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTCACC AAGCCTCCTA
  AGCTCAGGTC TGTGGTAGCC ACAGGAGAGC TAGCTCCATG CTGTGTGGCT GGTGACATTT
  CCGGCTGCCA GTGCCCAACC AATCAGTGAC AGACTCAGCT AGCCAGGACG ATGACACATG
  AAATATGATA ATTTTCTCTA AAGAGTCTGG GAGGGGAGGG GGCTGGTTTT GGCTGGGAGG
  R
  TGAGGCAAAC AGGGCTAGGT AAGAGAGAGC CAGGCATGGG TTTCAGTGGT CTGCCTGGCA
  GGACCAGAAG AGGAAATGAG AGCTGGGGCT AGAGCTGGAG GGACCTGTCC TAGAGTGGCC
  CTAGGCACAG AGTGATGGAG GAGCCTGCTG ATGGTCAGGA GCAGGAGGCA GGTAGCATGC
  CCGGGATGAT CCTCTGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147336397	ENSMUSSNP6362510	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51473895					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119670252 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14707	CpG island 14707			1736 bp proximal
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			within coordinates
Rr398436	regulatory region 398436			345 bp upstream
Rr598655	regulatory region 598655			51 bp distal
Rr598656	regulatory region 598656			950 bp proximal
Rr598657	regulatory region 598657			1451 bp proximal
Tssr38753	transcription start site region 38753			1 bp upstream
Tssr38754	transcription start site region 38754			1252 bp upstream
Tssr38755	transcription start site region 38755			1320 bp upstream
Tssr38756	transcription start site region 38756			1449 bp upstream
Tssr38757	transcription start site region 38757			1478 bp upstream