rs51473636 SNP Detail

Summary

• ID
  rs51473636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119492124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAT TATTTGTTGA ACCAACAGCT
  Y
  CATAATCCTT TATCTCTGTC ACAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147338483	ENSMUSSNP141897	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320476601	CHEV_2_119487379	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51473636					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119492124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12124	CpG island 12124			929 bp proximal
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1			Intron
				Noncoding-Transcript-Variant
Rr397235	regulatory region 397235			1029 bp upstream
Rr563557	regulatory region 563557			699 bp proximal
Rr563558	regulatory region 563558			1145 bp proximal
Tssr25825	transcription start site region 25825			1113 bp downstream