rs51470912 SNP Detail

Summary

• ID
  rs51470912
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105615861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGACATAG GATTTGGGAC CAGGTCAGCT TGAACCCAAA
  CCTTGGCCCT GTCTGTATAT TAGTGGTTTT TCTTATCTTT AGAATGCATT GTTAAAGATA
  W
  CTGCTTCAAA TAGCTACAGG GAAGAGTAAA TGATAATATA AGTAGAATCT GGTCTTGAAC
  TTGAAAGTCT CTTGCTCTTA GCCTCCCAAG GTCAGGACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135577624	ENSMUSSNP4783326	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320863087	CHEV_3_105511463	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51470912					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105615861 () rs orientation: forward

Symbol	Name	Function Class
Inka2	inka box actin regulator 2	Intron
Rr367522	regulatory region 367522	1332 bp downstream
Rr582759	regulatory region 582759	1551 bp distal
Rr582760	regulatory region 582760	578 bp distal
Rr582761	regulatory region 582761	1514 bp proximal