rs51466119 SNP Detail

Summary

• ID
  rs51466119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152986954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACATGAA CTCTCTCGTC
  TATTTGTTGC TTTTGGTCAT GGTGTTTTAT CACAGCAACG GAAAAGTAAG ATGCTCAATA
  GATCCTTTAG GGATGGGCTG TAGGAGGAAT AATTGCTTCT TTATTTATAA ACCATGCAAG
  TATTCGTGTA AGAGTTTGAA GAAACAAATA TATAGGCAAA TTTGAATAAT TTAGTATAAC
  R
  GTATATTGGA AATATACAAT CACCATTTCA AAATTCATAA TTTTAATTTC TTCTAGAATT
  TTTTAAGCTT TTGAACTCTG ACAGTTGTGT ATGTCCGTGC AATGAAATAT GTTAATATTC
  AAGCCCTGTT TCCCCTTAGT CTAAATGTCT TTTGAGGATC AGAAAGGATT AAGAAAGTAA
  CTTTTGCTGA ATATTCTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136107389	ENSMUSSNP930844	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321030486	CHEV_3_152944281	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51466119					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152986954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			811 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant