rs51465745 SNP Detail

Summary

• ID
  rs51465745
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27255762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTATC TGTTTCCTTC
  CCATGAAGAA CCTAAGTAGG AAGGGGACAG GGTAAATTGT CCCGGCTTCA GAAAATATAA
  ACCTGGAGGT GACAAGGAAG AGAGACATAG ACAGTAACAC TGTGCATCCA TTTGTTCAAT
  CAATTTCTGT TAGGCTTGGT GGTACTGGGA CAGGAGGAAT TCAAGGACTG CCTGAGCTAC
  M
  GAAAGGGCAC AGAGCTAGCC TGGGCAATGT TGTGAGACCC TGTCTCAAAA CAAAAAGTGG
  CTTGCATTTT CCCACAAGAG AGAAGTAATT AATGTGGTAG CCATGTAGGG TCACATGTGA
  ACTTGCACCT CTTTTGCAAA GACGGAGACA TGTACCTGCT CTGGAAATTG CTTTGGTCTT
  CTGTGTGGCT CACTGTCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702734	ENSMUSSNP646984	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51465745					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27255762 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			149 bp proximal