rs51464335 SNP Detail

Summary

• ID
  rs51464335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152049982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCGTGG TCATCCCCCT
  GCCTCTGAAA CTCAATCACA GTCATTCCCC TGCCTCAGAA ACTCCCTCAC AGTCATCCCC
  CTGCCTCAGA AACTTTTTTT TTTTTTTTTT GGTTTTTTAA GACAGGGTTT CTCTGTGTAG
  CCCTGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTTGAACTCA GAAATCTACC
  Y
  GCCTCTGCCT CCCAAGTGCT GGGATTAAAG GTGTGCGCCA CCACTGCCCG GCCACCTTAG
  CTTTCTTGCG TGATAGATTA TGCCCTCTTA TTTCATGGGC CAAAAATAAA ATGGAAAAAA
  AATTTCTCTT AAATTGCTCC TGGTGATTCA TGCCTTTAAT CTCACAAGTC AGGAGGGAGA
  GCTCAAGGCT AGCCTGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028698	CHEV_3_152007309	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51464335					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152049982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13948	CpG island 13948	1805 bp proximal
Rr587533	regulatory region 587533	601 bp distal
Rr587534	regulatory region 587534	1643 bp proximal