rs51461199 SNP Detail

Summary

• ID
  rs51461199
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132781312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA GCCTAGCTCT AGGAAGACAG
  M
  GGCAGGTGGA TCTCTAGGCT AGCCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147480742	ENSMUSSNP6051542	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51461199					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132781312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			15 bp upstream
Rr601173	regulatory region 601173			1061 bp proximal
Tssr39445	transcription start site region 39445			1099 bp upstream