rs51459008 SNP Detail

Summary

• ID
  rs51459008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72873816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT TCTCTGTGCC CTTGGCTGCA
  Y
  TGGTGTTTCT CAGAGTAGTC CAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133287925	ENSMUSSNP7062553	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321823140	CHEV_6_72846827	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51459008					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72873816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17554	CpG island 17554	1860 bp proximal
D530018E20Rik	RIKEN cDNA D530018E20 gene	914 bp upstream
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632326	regulatory region 632326	1475 bp distal
Rr632327	regulatory region 632327	1433 bp proximal
Tssr57165	transcription start site region 57165	1867 bp upstream