rs51458712 SNP Detail

Summary

• ID
  rs51458712
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTGGAG TTCCCCGACT
  TTTCGAAAGA AATTCATAAG TACTTAGGAG CAAAATGATA GGATCTTCGA GGTACGCTTT
  AAAGTTTTCT AGTCGAATTG AAGGCATTTC GGTTCAGTCA GCCTCCAGAA AATGCAGGAA
  GCACCATCGA CTTACTGTCT TCTCCTTGCA GAGCTGCAAC ACGGATGGAT GAATGAATTA
  K
  CTACCTGTGG CAACCAAAGA GCCTTAAAAG CTAGCCTTAA AACCAGATGT GCAAGCCCTC
  TCTCAAGGAT AGCCCTGGCA CTCTTGAGGC AGGAGGATTA GGAGTTCAAG GCCATCCTAG
  GCTACTTTGA TGACTTTGGG GCCAGTCTGG GCTACCTGAA ACGATATTAC AAACAAACAA
  CAAACAGAGT TATTTGCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147477920	ENSMUSSNP6205845	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321336228	CHEV_4_132313426	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51458712					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	180 bp distal
Gm70165	predicted gene, 70165	691 bp upstream
Rr601063	regulatory region 601063	270 bp distal
Rr601064	regulatory region 601064	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	264 bp upstream
Tssr43702	transcription start site region 43702	404 bp upstream
Tssr43703	transcription start site region 43703	359 bp upstream
Tssr43704	transcription start site region 43704	324 bp upstream
Tssr43705	transcription start site region 43705	271 bp upstream
Tssr43706	transcription start site region 43706	252 bp upstream