rs51448970 SNP Detail

Summary

• ID
  rs51448970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110250546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GTTGACATGG CTTCACCCAC
  M
  ATCTTCAATA GACATGGTTT TCTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61449409	NES16837025	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51448970					SNP	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449409	NES16837025	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110250546 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	Intron
Tssr3020	transcription start site region 3020	589 bp downstream
Tssr3021	transcription start site region 3021	182 bp upstream
Tssr3022	transcription start site region 3022	254 bp downstream
Tssr3023	transcription start site region 3023	890 bp downstream
Tssr3024	transcription start site region 3024	913 bp downstream
Tssr3025	transcription start site region 3025	992 bp downstream
Tssr3026	transcription start site region 3026	1048 bp downstream
Tssr3027	transcription start site region 3027	1131 bp downstream
Tssr3028	transcription start site region 3028	1209 bp downstream
Tssr3029	transcription start site region 3029	1224 bp downstream
Tssr3030	transcription start site region 3030	1245 bp downstream
Tssr3031	transcription start site region 3031	1418 bp downstream
Tssr87360	transcription start site region 87360	1669 bp downstream
Tssr87361	transcription start site region 87361	1616 bp downstream
Tssr87362	transcription start site region 87362	1361 bp downstream
Tssr87363	transcription start site region 87363	645 bp downstream
Tssr87364	transcription start site region 87364	594 bp downstream
Tssr87365	transcription start site region 87365	560 bp downstream
Tssr87366	transcription start site region 87366	215 bp upstream
Tssr87367	transcription start site region 87367	232 bp upstream
Tssr87368	transcription start site region 87368	788 bp upstream
Tssr87369	transcription start site region 87369	813 bp upstream
Tssr87370	transcription start site region 87370	846 bp upstream
Tssr87371	transcription start site region 87371	885 bp upstream
Tssr87372	transcription start site region 87372	941 bp upstream
Tssr87373	transcription start site region 87373	971 bp upstream
Tssr87374	transcription start site region 87374	1012 bp upstream
Tssr87375	transcription start site region 87375	1030 bp upstream
Tssr87376	transcription start site region 87376	1052 bp upstream
Tssr87377	transcription start site region 87377	1060 bp upstream
Tssr87378	transcription start site region 87378	1110 bp upstream
Tssr87379	transcription start site region 87379	1160 bp upstream
Tssr87380	transcription start site region 87380	1373 bp upstream
Tssr91614	transcription start site region 91614	1515 bp upstream
Tssr91615	transcription start site region 91615	1481 bp upstream
Tssr91616	transcription start site region 91616	604 bp upstream
Tssr91617	transcription start site region 91617	579 bp upstream
Tssr91618	transcription start site region 91618	559 bp upstream
Tssr91619	transcription start site region 91619	827 bp downstream
Tssr91620	transcription start site region 91620	931 bp downstream
Tssr91621	transcription start site region 91621	1026 bp downstream
Tssr91622	transcription start site region 91622	1068 bp downstream
Tssr91623	transcription start site region 91623	1530 bp downstream