rs51448878 SNP Detail

Summary

• ID
  rs51448878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172462402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT CAGTGGGAAC GAACCTTGAC
  R
  GCAGACAGCT GTGTCTGGAA GTAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120013352	PARCsnp_1.20754	PARC_SEQ	INBRED	f	SNP			G	A
ss120015564	PARCsnp_1.10933	PARC_SEQ	INBRED	f	SNP			G	A
ss146197912	ENSMUSSNP1040630	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320126709	CHEV_1_174564966	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs51448878					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172462402 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	1898 bp upstream
Gm35601	predicted gene, 35601	within coordinates
Rr396594	regulatory region 396594	1641 bp downstream
Rr423643	regulatory region 423643	1779 bp distal
Rr423644	regulatory region 423644	930 bp distal
Rr423645	regulatory region 423645	1009 bp distal
Tssr10245	transcription start site region 10245	1760 bp downstream
Tssr15248	transcription start site region 15248	1966 bp upstream
Tssr15249	transcription start site region 15249	1892 bp upstream