rs51446908 SNP Detail

Summary

• ID
  rs51446908
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43479606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACATCTT TGTAAGGGCC
  CTTCCGAGCT CCATCCTACA GGCCTCCAGC CCACACGGCG ACCACTGGAG CTTATTCCTT
  GCTTCACTCC GTTTTTCACT CTTTTCCACC TCGCCAGAAG CAGGAAATCC AAGCTCCTTG
  GCACGACTGG CTTCTGTCAG GCCACCGGAC TCATCTTGCT CCTTTCCTTT CTATCGCCTT
  T
  ATCGCGGGGG TGGGGGGTAG GGGGGCAGCA ACTCTATAGA AGCCTCCTCT CCTTTGCCTT
  GTGGTGCCCC CTGCTGGACT GTTTTCTACT CGGTACCTGT TGAGTCATTT TTATCTCTGA
  ATTCCTCCAC AGGACTCCAT GTTTTCCTCA TTTTAATAAT CCCTAGCGTT ATTGAACACT
  CTGTCTTAGT GATTTACATA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146240257	ENSMUSSNP1050203	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs51446908					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43479606 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	790 bp upstream
Rr398231	regulatory region 398231	1057 bp downstream
Rr590996	regulatory region 590996	829 bp distal
Rr590997	regulatory region 590997	1216 bp distal
Rr590998	regulatory region 590998	700 bp distal
Rr590999	regulatory region 590999	within coordinates
Rr591000	regulatory region 591000	529 bp distal
Rr591001	regulatory region 591001	61 bp proximal
Rr591002	regulatory region 591002	597 bp proximal
Rr591003	regulatory region 591003	1316 bp proximal
Tssr41421	transcription start site region 41421	795 bp upstream