rs51442428 SNP Detail

Summary

• ID
  rs51442428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121664293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAAAGGCC AAGAAACATG AGCATCACAG AGGGACTTCC
  ACGCCGGCTG ATATTGTTGG TGCTTGCCCT CTCCTGCTCA AAATGGTCTT CTCCACGTCC
  R
  TGTCCAGGAC TATCATTTAT TATTTTTGCA ATCACCCTCT AATCACACCA AGACTTTTTT
  TTTATTCAGA AGGTCAGACA TTTTCATAAA AGTGTTAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135730746	ENSMUSSNP2028415	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320906551	CHEV_3_121573562	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51442428					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121664293 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	1221 bp downstream
Rr584188	regulatory region 584188	620 bp distal
Rr584189	regulatory region 584189	144 bp proximal
Rr584190	regulatory region 584190	1184 bp proximal