rs51441926 SNP Detail

Summary

• ID
  rs51441926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156959560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGGCCTCT GGAGTAATTA CTGGAGAATG CTGGATCACA
  CTGTGTGAAT TCAGGCACAC AATCACTGTT TGAAGTACAA AATCATATTA TCCAATAATA
  R
  TAATTAGGGA AGCGTGAGAC ATGGGGTTGG AGAAGTGGCT TAGAGGTTAA GAAAACCTGC
  TATCCACGCC GAGGACCTGG GTTTGGGCTC CAGCACCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148092360	ENSMUSSNP1065649	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A		A
ss320584283	CHEV_2_156943376	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51441926					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156959560 () rs orientation: forward

Symbol	Name	Function Class
Rr568436	regulatory region 568436	356 bp distal
Rr568437	regulatory region 568437	492 bp distal
Rr568438	regulatory region 568438	91 bp distal
Rr568439	regulatory region 568439	1391 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27144	transcription start site region 27144	1952 bp downstream