rs51440149 SNP Detail

Summary

• ID
  rs51440149
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85372426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAATAG AATAGAAAAG
  AAAAGAGAAA AAGAAAGAAG AAAGAAGAAA AAGAAAAACG AATTATGACA TCTTGGCCTC
  AGATCCTAAA ATAGAGTTGG GTGATTTTTT CATGGGATTC TCCATCAAGG AGATCCAATT
  CTAGTTAAAG CTGAAGTGCC CTCAGCAAGA ATACAGGACG GAGGAACCTC CCTGTGCACT
  M
  TCTTTCCCTG TACCATCATG CCTGGCTTTT TGTTGTGGTA AGATTTGTGT ATGAGTGTTT
  GCCTGAATGT ATTCTCACCA TGTGTGTGCA GTGCTTTGAA GAAGCCAGAA GAGGGCACCA
  GATCCCCTGG GACTGGAGTT ACAGAGGGTT GTAAGCTATC ATGGGGCTAC TGGGAATTGA
  ACCCTGGTCC TCTAGAGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906817	NES15957220	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51440149					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906817	NES15957220	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85372426 () rs orientation: forward

Symbol	Name	Function Class
Rr633204	regulatory region 633204	101 bp proximal
Rr633205	regulatory region 633205	1223 bp proximal
Rr633206	regulatory region 633206	1847 bp proximal
Rr633207	regulatory region 633207	1924 bp proximal