rs51439343 SNP Detail

Summary

• ID
  rs51439343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116944719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAAGCC TTCTCACCTG
  AACTCAGATT CAGATAGTCT AACCAGCCAA CCTTGCCAGC AGTCTCCCCA GTTGAGATCC
  CAATTGTATC CTCATCCACG TGCTGCAAGT GGTGTACCCA CTGAGCCATC TCCTCATCCT
  TTCAGCTGCC TTTAATGGAA TGACTGTTCA CTCCTTTATA ACTCTTGTGT CTTAATCTTC
  K
  CTGGCTGAGA GCATTTGTTT CTCAGACATA CATATCCATT CCTAGATGCC TCAGAAACTC
  CCTACATCCA GTCAAGATTC TCAAGATGAG TAGGCAGTCT TCTCACCCCT CCCTTCACCA
  TTTATAGAAT CTGATGGTCC TTGAAGTTCT TTTTAGGATA TGGTACCACA ACCCGTCCAG
  CGAGCTAAGA CCACCCGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60434913	NES15943049	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51439343					SNP	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60434913	NES15943049	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116944719 () rs orientation: forward

Symbol	Name	Function Class
Rr583834	regulatory region 583834	1944 bp proximal