rs51438748 SNP Detail

Summary

• ID
  rs51438748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22494876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAACTT CCCCTTTGGT
  TTCTAACGTT GTAAATACCT TTTCTCAAAG AGCTGTAAAA GGAAAATACT GGTACCTACC
  TATTTACTTA CAATTTAGAG AATACATACT GTTTAAGAAG ACAAAATGAT GTGGAAGTAT
  AAGATGCCCT AATTCTTTGG TGGAACCAGG CTCTGCCAAA AACCAGTGTC AGATGAGGCA
  R
  GGTCTAAGCT GTGGAAACAG CTGAGGAAGA GATCTGAGGA TCAGCCTAGC CTGGTCCACC
  GCAAAAATCG GGCGAATATT GTACACTCAA AGCTCTTTCC CAAAGATGCC ATGAATGTGG
  AGGAAAGCAG GGTGGGGTGA GTGGAATTTT AGGTCAGGCA CTTGGGCCCC CTTTTTTCTT
  TTCTTTTTAG TGATCTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60871008	NES15983209	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51438748					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871008	NES15983209	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22494876 () rs orientation: forward

Symbol	Name	Function Class
Rr379050	regulatory region 379050	within coordinates
Rr627113	regulatory region 627113	612 bp distal
Rr627114	regulatory region 627114	747 bp distal
Rr627115	regulatory region 627115	1782 bp proximal