rs51425997 SNP Detail

Summary

• ID
  rs51425997
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71763883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCCTCA TCCCCACCCT
  TGTGCTAGCC CACTTTTCAC ACCACAGACT ACATCCACTC TCTTGACTTG CTGCTGGAAA
  CATAACTTTG CCTTTGTAAC CAGTAACCAC AAGGAGGCAG TTTTGGCAAC AGCCTGCTGT
  CTGACTAGAT GGGCATCATT CACTGGGAAA TCGAATTATG TTTTCTCATT CCTTTATTTT
  A
  TTCCCAGTCA GTCAGTCTGA CCTTTTAAAA ATAGGACTCA GAGTTGCTAT TTCTAGGATG
  ATAAGAGGAC GTTCTATAGG TGTAATGCAA GAAGGCATGG AAAGATAAAG ATGAGACAGG
  AAGGGAAAAG AAACAGTCAG CCACTTGCAT AGCTCCTGCA ACAACAGTCC ATGTTAGAAG
  GGCAGATGAG GGGAAAGAAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133277285	ENSMUSSNP5080931	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51425997					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71763883 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632005	regulatory region 632005			77 bp distal
Rr632006	regulatory region 632006			1289 bp proximal