rs51425709 SNP Detail

Summary

• ID
  rs51425709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151808575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAATCCC GTGGTGGTCG
  GAGCACACAC AGCAGGAAGT AGCTGGCCCA TTAGCTAAGT TTAGTGGACA TATCCGGAAT
  ACAGCATGAC CTTATAGCTA AGTGTAAACC AATACAGTAA ATACTTATAG TGTCAGCATT
  AAATAGTATG GATTTTTTTT CTTTAAGAAA AAGAAAGAAA AGGACGCCAT TCCTAAGCTC
  Y
  GAACTACCTC GATAGGACAA AGTTGTAGCA TAAGTGATCA GACAGTCGTT TTAAAGGGCG
  TGACAAGTAC ACAAGCTGGA AGCCTTCAGA AGGGCGTGAT TTAAGAACTG CGTTTCCAAA
  GGTGGAGAGG TGTTAGACAC ACAGGAGACA CACCTCGGGT AGCGGACAAT ATACATGAGA
  ATATGTGAAG TTCGACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136100763	ENSMUSSNP1241904	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321028022	CHEV_3_151765902	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51425709					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151808575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			1123 bp downstream
Rr587450	regulatory region 587450			2000 bp distal
Rr587451	regulatory region 587451			1267 bp distal
Rr587452	regulatory region 587452			1861 bp proximal