rs51424699 SNP Detail

Summary

• ID
  rs51424699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145811547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATCATAG TCCTCCCACA
  TCAACCACTA ATTAAGAAAA TGCCCTTCAG CTGGATCTCA TGGAAGAATT CTCTCAGCTG
  AGGCTCCCTC CTCTCTGATG ACTCTAGCTT GTGCCAAGTT GACATAAAAC TATCCAGCAC
  GCAAATAGAA CCACTTAAAA CAATGGTCTT GGACGACAGA GATACAATTG ATGCTTTGAT
  Y
  AGTATTTTAT GCTTCTGACA TTTTTTGGGG GAAATTTCTA TTCAGTCTTT CTATCCCTCA
  CTCCTGCCAC CGCTGCCCTA TGTGTACACA CTACTTTTTG ACTTGACTTT TGGCCATCAA
  ACTCAGATGC TGTCATGGTT TGAATTTGCT TGGCACAAGG AGTGGCACTA TTTGAAGGTG
  TGGCTTTGTT GGAGTAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136042030	ENSMUSSNP4324880	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321009513	CHEV_3_145768756	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51424699					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145811547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr586924	regulatory region 586924			1353 bp proximal