rs51421984 SNP Detail

Summary

• ID
  rs51421984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90338380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGATGG GGGAGGGTGG
  AGGTGTGGGG GGAGGGGGCT TCTTGGGAGA TACATGAAGT GGGAAAGACC GACTCAGAAG
  CATAATTATT TGAGAAGCCA GGATGTAGCT GCTCTGTTCT GCTGGTCACA TGGCTTTATG
  AGGTAGAGGT CAATATGACA AGGCTTCCCC AATGCTGGTG CCTGAAGTCT TGCAAGCATT
  Y
  CTGCTCCGGG CAAGTTGACA CAGTTAGCTG AGAACTGTTC TGTCTCTTGC AGGGGTGAAG
  TCATCAATGG GGGATTTGGC CTTGTTCTAG ATGGAACTGC AGAGGCTGAG CAGAAAGCCA
  GGATGATGCT CAGCTGGGAT GTCTCCAATG GTGTAAGTCC CCCTGAACTC TTCAGCTCCT
  CAATACCCCC TCTCCTACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60907157	NES15949595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51421984					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60907157	NES15949595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90338380 () rs orientation: forward

Symbol	Name	Function Class
Rr634185	regulatory region 634185	1673 bp distal
Rr634186	regulatory region 634186	527 bp distal
Tssr57640	transcription start site region 57640	1902 bp upstream
Tssr57641	transcription start site region 57641	1985 bp upstream
Uroc1	urocanase domain containing 1	Intron