rs51418899 SNP Detail

Summary

• ID
  rs51418899
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83995646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTCAGGA GAGTAGAGGA
  GGAAATGGAA ATAGAGTTTG GAGGCTCTTT CAAAAGGTAA TGCAAAAAGA GCGTGTGGTT
  GGCGTTTAGG CTGAGTGGTG TGGTTCCCAC ATGTGTGTGC TGTCAAGAGA GAGGGAGACT
  GGGCAACTTG AGAATCGCTG TCTGACCGCT AAGCATCCAC ATAAGCAGAG TTGGTTGTCT
  K
  CCCTGCCAAG TCATACAGGG AGCAGGTGTG GAGGGCACGA GCAGGATATC CCCTCTGAAA
  GTGTTGTGTC CCTCAAAATG AAAAGGGCCG GGACCATGCC CCCGCCCCAC CCCCATTTAC
  CTGCTGGAGT GTGTGGGGGT GGAGGTGGGG AAGAGAAGCT TGGGTGCTGT TGGGAAGGAT
  CTTCCTAAGC TGTTACAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60905567	NES15954300	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51418899					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905567	NES15954300	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83995646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	281 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	942 bp distal
Rr632976	regulatory region 632976	1055 bp distal
Rr632977	regulatory region 632977	257 bp proximal
Rr632978	regulatory region 632978	369 bp proximal
Rr632979	regulatory region 632979	1305 bp proximal
Tssr1912	transcription start site region 1912	730 bp upstream
Tssr57398	transcription start site region 57398	682 bp upstream
Tssr57399	transcription start site region 57399	700 bp upstream