rs51408839 SNP Detail

Summary

• ID
  rs51408839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62415494 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C CTGTGTAGGT ATATCTTGGT ATTCTGTACT TTTTGGCTAA
  TATCCACTTA TCAGTGAGTA CATACCATGC ATGTCCATTT GGGTCTGGGT TATCTCACTT
  R
  GGATGATATT TTCTAGTTCT ATCCATTTGC CTGAAAAATT CATGATGCCC TTGTTTTTAA
  TAGCTGAGTA GTATTTCATT GCGTAAATGA ACCACATTTT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148792349	ENSMUSSNP5424119	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51408839					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62415494 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13215	CpG island 13215	851 bp distal
Dhx36	DEAH-box helicase 36	1069 bp upstream
Gm65214	predicted gene, 65214	within coordinates
Rr577529	regulatory region 577529	988 bp distal
Rr577530	regulatory region 577530	1014 bp distal
Rr577531	regulatory region 577531	141 bp distal
Tssr33431	transcription start site region 33431	1106 bp upstream
Tssr33432	transcription start site region 33432	1046 bp upstream