rs51407840 SNP Detail

Summary

• ID
  rs51407840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27255502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAGTTAG AAGAGTCTCT
  TGAGGGGGAC AGGGCTGTGC TCCCCACCCC CACCCTATGT ACCTAGCTTT GAAAACTTGC
  TGGCACCAAG GAAACCCCTG TAAATTCCCT AAGTGAATAA GTGGGTTAAG AGGCAGGGAG
  GTCCATCCCC AGAAGCTTTG AGTGCAGAGG GCAGGGTGCT AATCCTGCAG AGGAGGTTAC
  R
  GCCCTTTCTC AAGCCAGGCT GCATCCTGCA GGGTCTGCTG GCCAGACTGT TTGCTTTTCC
  CTGCCTATCT GTTTCCTTCC CATGAAGAAC CTAAGTAGGA AGGGGACAGG GTAAATTGTC
  CCGGCTTCAG AAAATATAAA CCTGGAGGTG ACAAGGAAGA GAGACATAGA CAGTAACACT
  GTGCATCCAT TTGTTCAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702719	ENSMUSSNP4554434	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51407840					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27255502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			409 bp proximal