rs51404875 SNP Detail

Summary

• ID
  rs51404875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116125641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGGAGG GAGGGAGGGA
  GGGAGGGAGG GAGGGAGGGA GGGAGGGAGG GAAGGAGAGA GGGAGGGGGG ACTTTGAATT
  AATTAAAACC AAGAAAAATC ATCCAAACGT GTGGCAATGT CACTGTCATG TTGTGAGGGA
  CTGGTTAGTC TTTTAATATC AATCCACCCA GGGTTGATTG GTCGCTCACC CAACCCTTAC
  Y
  GAATCTTGCC ACTAGATGGA GACATGACAT CAGTGAAGCA CAGGACCCAG AGGTGCTAAA
  GAACAGGCTA AGGAAACAAT TTCAGAGCTA AGAGACTTCA ATTCATCGTT TCCCAGACTT
  CCCTTTAAAG TTGGGAAAGT GGGGGAAAGC TGAGGGAAAT GACTGTTCTA GGTATGATAA
  TAAGGTAGCC AGAACATTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60437493	NES15945749	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs51404875					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437493	NES15945749	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116125641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375619	regulatory region 375619			1125 bp downstream
Rr397962	regulatory region 397962			within coordinates
Rr583695	regulatory region 583695			within coordinates
Rr583696	regulatory region 583696			5 bp proximal
Rr583697	regulatory region 583697			231 bp proximal
Rr583698	regulatory region 583698			1312 bp proximal
Rr583699	regulatory region 583699			1416 bp proximal