rs51403574 SNP Detail

Summary

• ID
  rs51403574
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152593306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTTTCT AATCTGAAGC
  CAAAATTCAC TGAATAATTT CTTATGAAAT TCATCAGCAA CTCAAACATC AATTTTAAAA
  TAAAAATATT TTAACTCAAT ACAGTCCAAA GACATATTGA TCTAGTACAT GCTGAGAGGT
  GTGAGTTAGT AAATATTTGT CTTTTTTTTC CCCCCTGATT ATGCCATCAT GTGTCTGTAG
  G
  AGCAGAAATT TTTGCATGTT CAGTGAGCTA TCACAGTTCG TGACATACAG GAGTTTGGAG
  TTTGAACAGT GTTTGTTGGT GTTATTGGGT AAGGCAAGGT AAACAGAGCA AATGCATGTT
  ATGTATTCAG GACGTCAAGG GTGCAGTGAT GTAGTGGGAC ACAGTACAGG AGGGCCTTCA
  TTATGTATGC ACTTGAACTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136104432	ENSMUSSNP566193	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321029056	CHEV_3_152550633	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51403574					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152593306 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	995 bp distal
Rr587620	regulatory region 587620	790 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron