rs51399503 SNP Detail

Summary

• ID
  rs51399503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATACAGTA TCTAATGGCA
  TACACATGTA TCAAACAACT GCTTGCAAAA CTAATCCCGT GGGTGGGCAC ACATATGTCA
  TCCCAGTTAC CCAAAGGCTG GCATTGGAGA GTCTCAAATT CAAGGTCAGC CTGTGAAAAT
  AGTGAGACCT TAGCTCAAAA ACTACTTAAA GGAAGCTTGG AATATTCCTC AGAGGTATAC
  R
  CTTGCCTAGC ATGTGCAAGA CCCTGGCTTA GTCCTCCAAT CCTGCCTCCT AACTGTGTAG
  AATTTGAAAT CTGTGTGAAA TCATATGAAA CCCATACTTT CAACCCCACT CCCCCCCCCA
  AAATCTTTAT TTTCATGCAT ACTTTGTGAA AACAAATTGA GACAAAATTA AATTCCTGTC
  CACCTGAGAG AGAAAGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320429660	CHEV_2_101479033	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51399503					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469221 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	735 bp proximal
Tssr25364	transcription start site region 25364	1226 bp downstream
Tssr25365	transcription start site region 25365	1350 bp downstream