rs51397111 SNP Detail

Summary

• ID
  rs51397111
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146128020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGAAATG CTTCCTGTTT
  TCTCCTCCGG CAGCTTCACA GTTTGTGGTC TTGCACTAAG CTCCTTGATC CATTTGGAAT
  TAAAGTTTGC ACAGGTGAGA GGAGGGCCCT CCTCCTCCTT CCCGGCCTGG GAATGGCCTG
  TCTTCTCTCC AGTGTATATT TTTTAGATCA TGGTTAAATA CGAGGTGACT GCAGCTGTGC
  S
  GTCTCTCTCT CTCCTCGGCC ATATTCCAAG GCCTCCATAC CTGTTGTCAT GGCACTACCC
  TGCTGTCTTT GTCACCGTGG CTGCATTATG TGACCTGAGA TGCACATAAC CTGTGACAGC
  TCGCTGTGCT GCTGTATTCA AGCTTTAGCT CTTTGGAGCC TCTGTATGTC TATATGAATT
  TTAGGTTTTT TGTAATTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136044153	ENSMUSSNP4575230	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321010290	CHEV_3_146085229	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51397111					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146128020 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	1628 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron