rs51392979 SNP Detail

Summary

• ID
  rs51392979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132738366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA CGAAATGCGG AGGAGACTGT
  R
  GCGTTTCCAG AGCGGCTTTC TTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147480655	ENSMUSSNP5198533	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321338138	CHEV_4_132566970	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs51392979					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132738366 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	431 bp upstream
Cpgi14982	CpG island 14982	within coordinates
Rr601152	regulatory region 601152	1040 bp distal
Rr601153	regulatory region 601153	1718 bp distal
Rr601154	regulatory region 601154	within coordinates
Rr601155	regulatory region 601155	614 bp proximal
Rr601156	regulatory region 601156	659 bp proximal
Rr601157	regulatory region 601157	1160 bp proximal
Tssr39436	transcription start site region 39436	428 bp upstream
Tssr39437	transcription start site region 39437	463 bp upstream
Tssr39438	transcription start site region 39438	739 bp upstream