rs51390560 SNP Detail

Summary

• ID
  rs51390560
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106485964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTCTCT AGGGAACCCA
  GGATGATGAC AGACACTCAC TCCCAAGGTG TCACACCCAA TCCCTAAACT TCCCCCACCA
  GTCCGTTTGC TACCCTGCCA CAAGCTTTCT GGAGGCTGGC TCAGTGACCT TCTGGGATCC
  CTGGTTGGAG CAGAGGACCT CAAGTTTCTG TTATTCCACA CACCTGCTGA GGCAGGGAAG
  S
  GAGAACACTA GTACCCCCAG CAGAGCTGGA AGGACTTCTT CCTGTCCTGT CCCTGTGCTC
  TGGCCCGGTC TGTCACCACG GAAGACATTC CAGTTGCGCC AGAAGGACAC ATTCCTAGGC
  AGGTCTGACA CCTTCCAACT GTTCCTGGCA GTTGAAAAAC CAGTTTTTGG AGAGAGGCAA
  ATGAGAACCT GAATCCTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147169397	ENSMUSSNP2092424	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51390560					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106485964 () rs orientation: forward

Symbol	Name	Function Class
Rr596781	regulatory region 596781	within coordinates
Rr596782	regulatory region 596782	1534 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron