rs51390202 SNP Detail

Summary

• ID
  rs51390202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTAGGG GTCATCTTGG
  ACAGCTTCTA CAGGTCCTCT CTGCAGTCTC TTCCACATGT CCTAGAGGCA AGACCTTCAT
  GGGTAGATCT AGTGTCTCTG CATGCCATAT GGGTTTGAAA TGGCTGGGAC CAAGGTCACA
  CCCTGGCTAG ATCTGGGAAG CAAGAGCTGA TTGTGGGGGT GGGAAGGGGG AGTTTCTTTT
  R
  CTTTATCCCT GTAGGGGGCA CAGTTCTTTT CTTAAAGTGC TGTCTCTAGA CCAAGGCTGC
  TTTAAATCTT CTCACTGATG TGGGTAAAAT GAAACAGAAA TCAGAAAGGC CCAAAATGAC
  TCACAAGACT TTCATGGGCT CCTTATAAAA CCCAAGGTCC CTGGGGACTT TCCATAAGCA
  AGTCAATTGT TTAAGGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136104393	ENSMUSSNP4668885	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321029041	CHEV_3_152549818	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51390202					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592491 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	180 bp distal
Rr587620	regulatory region 587620	4 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron