rs51389014 SNP Detail

Summary

• ID
  rs51389014
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGTATC CCGCTGTCCC
  CCGTAGATCG CTGTGCACTG GCCTCCAGGC GTGGTCACGA CTCCCCGGGC CTCTCAAGGG
  TTAAGAGGAA AGCTTTGGGC TGACGTCGCT CTGGCCGAAG GTGGTTCCCC TAGCTGAGGG
  TGGGAGAGCC CGGCGGGCTG AAACCCGAGC TCTGTTTCAG CTGGAGCTTG GGGAGGTCCC
  S
  GCAAGAGCAG AGCCCGCTGC CCTGTTCTCG CCTAGGCATC CCTCCAGTCA CTCCCCTCCA
  GTCACTCGGT ACCGACACAG CAACGGGAAA CGATGGAGCT AGACAGATGG GCGCAGTTGG
  GGCTGGTGTT CCTGCAGCTC CTTCTCATCT CATCGTTGCC AAGAGGTACT GTTAGTGACC
  AGGAGCCCTT TGCGGGGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147115304	ENSMUSSNP1953118	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51389014					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380444 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11977	CpG island 11977			within coordinates
Pamr1	peptidase domain containing associated with muscle regeneration 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr561703	regulatory region 561703			77 bp distal
Rr561704	regulatory region 561704			804 bp proximal
Tssr19094	transcription start site region 19094			19 bp downstream
Tssr19095	transcription start site region 19095			within coordinates
Tssr19096	transcription start site region 19096			18 bp upstream
Tssr19097	transcription start site region 19097			39 bp upstream