rs51388682 SNP Detail

Summary

• ID
  rs51388682
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTCAGA CCTGGAACCT
  GTGCTCAGGA ACCTGGTCAC AGTCATGCCT AGGGGTCTCA GTTTCTACTC TGATGCTCAT
  GAGCATGGGA GCACAGACAG ATCTGGGAGG AGGAGGAAGA GGAAGACGAA GAGGAGAGAA
  AGTGTTTATT CCGGGAGGTC CTACAGCACC TTGCTTCCAA CTTTGAAAGG CAAGACGTTC
  M
  TGCCCTGTGC TCCTGGTTGT TTTTGTAACA CAGAGAAAGC TTGAAGATGG GTGGAGGTGT
  GTTCTCCTTA CACACCCCTC TGACCTCATT CCCACCTGCT CCCCCTTGTG TGCCCCACCC
  CAGCTGCAGC AGCTTCCTTT CTAGTCCTTG GACATCGCAA GCACACCGCT GCCTCAGGGC
  CTTTGCGCGT GCTCTCATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147543423	ENSMUSSNP1173641	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51388682					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1975 bp distal
Rr601982	regulatory region 601982	186 bp distal
Rr601983	regulatory region 601983	1216 bp proximal