rs51388662 SNP Detail

Summary

• ID
  rs51388662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGCTGA CAAATGACAG
  TGAGTGTAAC TTCCTTTGTT GTTTTACTTC AGACTCCTCG CTCCAGAAAG CCTATGTTCT
  AACCTCAACT CTTCCCTAAC TCTTCGCTAA GTAAAAGGGA ACTGTCTGAG GCAGGGGGAT
  GGATGTCGGA CTGGGAACAT GGGTCATAGC TCAAGACTGG TTCTCCTGAG ATAGAATTTT
  Y
  CTTGCCTTTC TTCACAGTAA TAAACCCCCA AAACTTAGGT GGCCTTTTTG GGGGAGTCTA
  TTTCTATTTA CCCCTGAAAC AGATAGCCAC TCTAGGCCAA AGAAAATTTG CTTCCAGTCC
  AGCTTAGTGA ATGGGACAAA CTTATTGGTG TTGTCTGTAG GGACATGGGT GGCTTGGGCA
  ATTGTATCAT CAAAAAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553192	ENSMUSSNP758130	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51388662					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623112 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	397 bp distal
Rr602184	regulatory region 602184	103 bp distal
Rr602185	regulatory region 602185	170 bp proximal
Rr602186	regulatory region 602186	1071 bp proximal
Rr602187	regulatory region 602187	1194 bp proximal
Rr602188	regulatory region 602188	1222 bp proximal
Tssr39650	transcription start site region 39650	606 bp downstream
Tssr39651	transcription start site region 39651	405 bp downstream
Tssr39652	transcription start site region 39652	325 bp downstream