rs51388523 SNP Detail

Summary

• ID
  rs51388523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152495884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTAAATA TGCTGTGCGC
  TTGCTCTCAC TGCTGCTTAG GCACACACGG GGGGACAGCC ATGGTAACTG GTTTCTTCCT
  CTACTGGGCT TCGGTGCCTT CTTAAGCTGC TCTGTGATAT TCCTGGTTCT ACTGGTATTT
  TTTCTCTTCT GCCCCATGGT GGTGTTGAGG TTTGAGAACA GGGAAGTAGA CCAATGGACC
  Y
  CTGCAGACAT GTCCTAGCAT TTCAGAGAGT GCAAGGCACA GCAGGGCTAT ACCTGGCAGG
  CAGCGTGTGT GAGGAAAAGA TACCCAGGCT GAATGTTGCA GATTCCAGCC TCACCCTCAC
  CCTCACGAGA CATTTATTTG CAGCTTATAA AAGGAAAATG TAGTTTGGAT GCAAAGGTGA
  TAAAATTGAA TCAAAAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ
ss61101181	NES16612829	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	KK/HlJ	PWD/PhJ
rs51388523					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101181	NES16612829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152495884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			1653 bp proximal