rs51387033 SNP Detail

Summary

• ID
  rs51387033
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT CAATAAGGTC CGGGTTTTGC
  K
  TGTAGGAAAA TGTTGTTATC TACCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
ss52177459	NES15227131	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	T	T	T	G			G	T
ss146960100	ENSMUSSNP2805779	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G									G
ss323270362	CHEV_10_21877918	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J
rs51387033					SNP	G	G	G	T	G	G	T	T	T	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52177459	NES15227131	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	287 bp proximal
Cpgi1374	CpG island 1374	1075 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	497 bp upstream
Raet1e	retinoic acid early transcript 1E	430 bp upstream
Rr384270	regulatory region 384270	1221 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	485 bp proximal
Tssr92677	transcription start site region 92677	283 bp upstream
Tssr92678	transcription start site region 92678	357 bp upstream
Tssr92679	transcription start site region 92679	409 bp upstream
Tssr92680	transcription start site region 92680	454 bp upstream