rs51384458 SNP Detail

Summary

• ID
  rs51384458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52785487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACGCTGC TTCCAAGTAA
  GCCGAATGAC ATTGTATCAT CTGTCCTTCT TTGCCATTTG ACTTTGCCTT AGAACGAAAT
  CCAGACAGCG AGTTTTGATA AGCATCCGCC CTACACCTTT CTCTCCCTAG GAAAATATAT
  TAGAAAGAAG TGTGTTTCCC TGCATCCCAG AATGCAGAGT CCAGAAGAGA CCAGGATAAC
  Y
  ACAGGGAGGG AGGAGGGGGA TGAGCTCCAG CGGGTGTGGG GATCGGCTAC AGTGTTTGTG
  GGCTGCTGTT TAAACTGCAG GAAATATTGT AACTGCGAAG AATTAACTTG TATGAATAAA
  GCAGTGAGTT CTCTCCACCC CACCCCACCC CACCCCGCCC TCCAAATGTT TAAGTCTTCC
  TACACAGGTG CACACGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135178979	ENSMUSSNP6147968	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320765648	CHEV_3_52681988	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51384458					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52785487 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	29 bp proximal
Rr576596	regulatory region 576596	1670 bp proximal