rs51378115 SNP Detail

Summary

• ID
  rs51378115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGGAAT AGAGACACTC
  GGGTCCTGCC TGTATGCTCT TGGGGAGTAT CTTGTGCTGC CCCACCATCA TGAACTCAGA
  TCAGGATTTC CCAGTAGCCT GTGTGTGCAG TTGCTCAGAG CAGAAAAGGG GAAAGAAAGC
  GCTTGGAGGT AGAGCAGTGT TGAGAGGGGA GTGCAGGTGG GTTTACTCTA TCCTCCCATC
  R
  CCTGTTGGGG GAGGGCATAC TCGGCCTTAT ATGGAGGTGG GTGGCAATTT TTAGGAGTAT
  CTCCTTCTAT GGATTTCAGG AAATAAACTC TGGTCCTAGT GCTTGAACAG TAAACAGCTC
  TGTCATTCTG TTGGGCCCCA GGCCACTCTT CTAATCTGTC TCTGTCTGCC TAATTTAGGT
  GACCACAACC AATACCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115239	ENSMUSSNP5683996	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320438736	CHEV_2_102389535	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51378115					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	388 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	634 bp upstream
Rr561703	regulatory region 561703	253 bp proximal
Rr561704	regulatory region 561704	1525 bp proximal
Tssr19094	transcription start site region 19094	667 bp upstream
Tssr19095	transcription start site region 19095	721 bp upstream
Tssr19096	transcription start site region 19096	739 bp upstream
Tssr19097	transcription start site region 19097	760 bp upstream