rs51371093 SNP Detail

Summary

• ID
  rs51371093
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38539090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTGTCTC AGCCGGAGCC ACAGCCCCGC CCTCCGCGCA
  AACCCCACCC ACACAGGGCC CTCCCCACAC AGGCCACGCC CAATACCGCC CCGCTGCCTG
  T
  AGGCCACGCC TCTCAAGGAC CACGCCCCTC CTATAGGTCA CGTCCCGCAT AGACCCCGCC
  CCTCCCAGTT AACCCCCACT CTATTGGCTC GCCTCTCGC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134837203	ENSMUSSNP7147827	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320719953	CHEV_3_38383863	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51371093					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38539090 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	97 bp upstream
Cpgi13104	CpG island 13104	within coordinates
Gm65619	predicted gene, 65619	164 bp upstream
Rr397648	regulatory region 397648	within coordinates
Rr575675	regulatory region 575675	695 bp distal
Rr575676	regulatory region 575676	within coordinates
Rr575677	regulatory region 575677	175 bp proximal
Tssr28929	transcription start site region 28929	254 bp upstream
Tssr33057	transcription start site region 33057	150 bp upstream
Tssr33058	transcription start site region 33058	119 bp upstream
Tssr33059	transcription start site region 33059	77 bp upstream