rs51363363 SNP Detail

Summary

• ID
  rs51363363
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77003221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCCCCA CACACAATTG
  GAATACCCAG AGACAAAAAG GTACCTTCAA GTAAGCACAC ACACACACAC ACACATTTTT
  CTCTCTTTTG GGCTCCTTCC TCCAACAACA GGGCAGCATG GCCTTCCTGG CCTGGCCTTT
  AACAAAATCA GAGACATTGA CCCCTATCAA ACAGCAAATC CAGATTCCAG AAAGCCATTC
  K
  CGCTGGCCTA GTGACAATTT CCCAAATTCC CCAGCCCTCA TCCTTGCCCA TCTCCACTGT
  CCTTCTTAGC CTGGCTCATT TCCCAGACCA CAAAGAACTA TCCAGGTTCA GCCAGGGTCC
  CCAGACCTTC TCACACCTCC ACCCTGAGTC TGTACCATCT CAAGTGACTC ACACTTTTTC
  TGCAGACCAG AGACCAAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52373579	NES15269445	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51363363					SNP	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373579	NES15269445	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77003221 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	870 bp upstream
Cpgi1754	CpG island 1754	679 bp distal
Gm67721	predicted gene, 67721	184 bp downstream
Rr384956	regulatory region 384956	within coordinates
Rr434420	regulatory region 434420	737 bp distal
Rr434421	regulatory region 434421	531 bp distal
Tssr94211	transcription start site region 94211	741 bp downstream
Tssr98227	transcription start site region 98227	863 bp upstream
Tssr98228	transcription start site region 98228	831 bp upstream