rs51360595 SNP Detail

Summary

• ID
  rs51360595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86802681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTGCTC TCCCTTTATG
  AGATTCATAA TAGTAAGTAC ATCCTCAGAA TTTTTATATT CTACACGACA GTCACTGAAC
  ACCCTTCATG GGGTCTGTCT TAGTTACTGT TCTAGTGCTG AGAAGACATC ATGACCAAGG
  CAACTAATAA CAAGCATTTA ACTTGAGGAC TCACAGCACC AGAGGGTTAG AATCCACGAC
  Y
  GTCTTGGTGG GGGTCACGGC AGCAGACACA GAGCGTGGCA CTGGAGCAGT AGTTGAGAGC
  TTAGATGTTG AGATAACACG AGGCAGAGAG AGGCCTAGCT GGGAATGTGG GTTTCAGAAC
  CCCAAAGCCC ACCCCTAGAA CACACCTCCT CCCAAAGCCA CACCTCCTAC CTTCCCAAAT
  AGTTCCACCA AATGGGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135450586	ENSMUSSNP1883335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51360595					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86802681 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579410	regulatory region 579410			541 bp distal
Rr579411	regulatory region 579411			1790 bp proximal