rs51359562 SNP Detail

Summary

• ID
  rs51359562
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108042646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGGAAGGA ACCAGAGAGC TGCTTATATC TTGAGTAGTT
  GAGGCCAATG CCCATGTAGA GCCAGGTCTA AAGAGCTGGG GGGAGTAGGA AGCTGGGGGG
  T
  GGGGGGGTGA GTAGGAAGGG GATTGTTTCA CACTTCGCTG CAGAGCAGAA TTCCAGGGCT
  ACTCACTGCC CCCGGGGGCG CTAGAGCTCT TTCCTAGAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133494232	ENSMUSSNP5264397	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51359562					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108042646 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	703 bp upstream
Rr399804	regulatory region 399804	492 bp downstream
Rr399805	regulatory region 399805	185 bp downstream
Rr399806	regulatory region 399806	34 bp upstream
Rr636028	regulatory region 636028	714 bp distal
Rr636029	regulatory region 636029	630 bp distal
Rr636030	regulatory region 636030	366 bp distal
Rr636031	regulatory region 636031	118 bp proximal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	632 bp downstream