rs51357982 SNP Detail

Summary

• ID
  rs51357982
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50755170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACTGAGC AGCTGGTGTG
  TGCTCAGGGG ATAAAACCAA TGTTGGCATT TGCTTTGAGA AAACACAATT AGGCAAGCTG
  CTGTTGGGTG TGGGATGTGA ATATTCACAC GACATGTCCT AAAACACAAG AGTTGGCTTT
  TGTTCCTTAG TCCGGTCTAT GGAGTCTGTG TTTCAGCTCT GAGTAATGTG GACAATTGAA
  M
  TCTGAGCTAC TTCTTTCTTT AGAGAAAAAG GAACAGGGTC CATTGGTGGC TATTAGAGAC
  AAAAAGAACA AGGTCCATTG GTGGCTATTC AGAGGCATTC ACATGATCAT TGCCCCCAAA
  CGAGCTTTTT GTTCCCCTAT GGTCTCAGGT AGACATCTGT TTATTTCAAC ACCCTCTATC
  ACTTCCCAGA GCCACTCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133184570	ENSMUSSNP927743	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51357982					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50755170 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	1911 bp distal
Rr630066	regulatory region 630066	within coordinates