rs51357056 SNP Detail

Summary

• ID
  rs51357056
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79960579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTAATTCA TATAGCCTTT TAAAAAGTCT TACGGGAAAT
  GTTATAAGAC ATTCCTATTT AACTGTTGAA AAAATACAAA CAAATGTTCT AGATTTGCAA
  W
  CCTAGTCTTT GAAGTGAGGG TTGTTGTCTT ATTGGTAAGA AACTTCCAAT TAAAAAAAAA
  AATACTTCTA AAACAAACCA AAACAAAGCA AAAAGTATT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146789755	ENSMUSSNP4109049	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320362030	CHEV_2_79970392	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51357056					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79960579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11847	CpG island 11847	987 bp distal
Gm13674	predicted gene 13674	1695 bp upstream
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	806 bp distal
Rr560062	regulatory region 560062	287 bp distal
Tssr24917	transcription start site region 24917	1239 bp upstream
Tssr24918	transcription start site region 24918	1212 bp upstream
Tssr24919	transcription start site region 24919	1097 bp upstream
Tssr24920	transcription start site region 24920	1062 bp upstream
Tssr24921	transcription start site region 24921	1043 bp upstream
Tssr24922	transcription start site region 24922	992 bp upstream
Tssr24923	transcription start site region 24923	957 bp upstream
Tssr24924	transcription start site region 24924	931 bp upstream
Tssr24925	transcription start site region 24925	686 bp upstream