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rs51357056 SNP Detail
Summary
  • ID
    rs51357056
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr2:79960579 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ACTTAATTCA TATAGCCTTT TAAAAAGTCT TACGGGAAAT
    GTTATAAGAC ATTCCTATTT AACTGTTGAA AAAATACAAA CAAATGTTCT AGATTTGCAA
    W
    CCTAGTCTTT GAAGTGAGGG TTGTTGTCTT ATTGGTAAGA AACTTCCAAT TAAAAAAAAA
    AATACTTCTA AAACAAACCA AAACAAAGCA AAAAGTATT                       
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
LG/J
SM/J
ss146789755 ENSMUSSNP4109049 ENSEMBL ENSEMBL_Sanger f SNP T A
ss320362030 CHEV_2_79970392 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
LG/J
SM/J
rs51357056 SNP T A A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79960579 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11847 CpG island 11847 987 bp distal
Gm13674 predicted gene 13674 1695 bp upstream
Pde1a phosphodiesterase 1A, calmodulin-dependent Intron
Rr560061 regulatory region 560061 806 bp distal
Rr560062 regulatory region 560062 287 bp distal
Tssr24917 transcription start site region 24917 1239 bp upstream
Tssr24918 transcription start site region 24918 1212 bp upstream
Tssr24919 transcription start site region 24919 1097 bp upstream
Tssr24920 transcription start site region 24920 1062 bp upstream
Tssr24921 transcription start site region 24921 1043 bp upstream
Tssr24922 transcription start site region 24922 992 bp upstream
Tssr24923 transcription start site region 24923 957 bp upstream
Tssr24924 transcription start site region 24924 931 bp upstream
Tssr24925 transcription start site region 24925 686 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory