rs51356220 SNP Detail

Summary

• ID
  rs51356220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA GGTACTACAG AGACAGGGAG
  W
  TGCAACTCTG CTATTCCTTC GGTGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147338575	ENSMUSSNP1247230	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320476624	CHEV_2_119490120	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51356220					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	1431 bp distal
Gm75025	predicted gene, 75025	720 bp downstream
Gm75032	predicted gene, 75032	709 bp upstream
H3f3c	H3 histone, family 3C	1242 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1563 bp upstream
Rr397235	regulatory region 397235	1412 bp downstream
Rr563557	regulatory region 563557	1597 bp distal
Rr563558	regulatory region 563558	1073 bp distal
Rr563559	regulatory region 563559	1548 bp proximal
Tssr25825	transcription start site region 25825	1549 bp upstream
Tssr25826	transcription start site region 25826	1766 bp downstream