rs51352680 SNP Detail

Summary

• ID
  rs51352680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20711348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGAACT TTATATCTTA
  AAATAATTCA CTTTGCTATT CATTATTACA ATGGTGAAAA TATTTTCTAT AAAAGGGTTG
  AAAATGTATT TGCTGAGTCT GATATTAAGT TGACTTGCAG CAAGTTTTAT TCACTTTATT
  TTGGTCTATG CTGTTCTTCA TGTGCAGTCA TGCATTTGAC CACTTGTGCA GAACCAGATA
  Y
  AGATGATATG CAAAGAAGTC AAGGTGGTCA CAGTCTAATA AAAATCCATT TGATAAAAAT
  TCTAATGTTG AATGTTGACC TTAATATGAT TTTTCACATG TAAGAAAATG TGTTCCTCCT
  TTTTCCTCCA TTGCTGGTGG GATTGCAAAC TGGTACAACC ACTCTGGAAA TCAATCTGGA
  GGTTCCTCAG AAAATTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60378010	NES15881150	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51352680					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60378010	NES15881150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20711348 () rs orientation: forward

Symbol	Name	Function Class
Rr574089	regulatory region 574089	1409 bp distal
Rr574090	regulatory region 574090	1698 bp distal